7th International Electronic Conference on Synthetic Organic Chemistry (ECSOC-7), http://www.mdpi.org/ecsoc-7, 1-30 November 2003


[A004]

Vibrational spectra of dihydropyrimidinones


Zuzana Benková+ Walter M. F. Fabian*, Ivan Černušák + and Alexander Perjessy+,#

+Faculty of Natural Sciences, Comenius University, Mlynská dolina, SK-84215 Bratislava 4, Slovakia
*Institut fuer Chemie (IfC), Karl-Franzens-University Graz, Heinrichstrasse 28, A-8010 Graz, Austria
#Dedicated in memoriam Prof. Dr. Alexander Perjessy who passed away February 2003


Abstract

Introduction

Dihydropyrimidines of type 1 exhibit a diverse range of biological activities, e.g. antihypertensive activity1. For instance, they act as calcium channel modulators. Some representatives of them (e.g. 2, SQ 32926, and 3, SQ 32547) have become superior in potency and duration of antihypertensive activity to classical dihydropyridine drugs and compete with the second generation analogs such as amlodipine 4 and nicardipine 51,2. These dihydropyrimidines possess a stereogenic centre at C4 and are interesting for the existing structure-activity relationship. The molecular interactions at the receptor level are determined by the conformation as well as the configuration of these compounds. The calcium channel modulation occurs in conformers with s-cis directed C=O bond of ester group with respect to the C5=C6 double bond. This side is recognized by receptor. The absolute configuration at C4 is responsible for the “molecular switch” between antagonist and agonist activity3. In the receptor-bound conformation the unsymmetrically substituted aryl moiety occupies a pseudoaxial position perpendicular to and bisecting the puckered boat-like dihydropyrimidine ring. Moreover, a synperiplanar orientation of aryl substituent with respect to C4-H4 is required for the activity.

This study deals with theoretical prediction of vibrational spectra in gaseous state and in CHCl3 solution of compounds 6a, 6b at density functional B3LYP/6-31G* level. The Onsager reaction field model4 has been employed to simulate the effect of solvent and in addition, models with specific interactions were examined. The primary attention was paid to stretching vibrations of both C=O bonds and N-H bonds. The results are compared with experimental IR spectra. The conformers within both of series 6a and 6b arising from the orientation of CF3 substituent and CH3 group in ethoxy fragment were considered. The nomenclature syn or anti distinguishes the relative orientation of these groups with respect to the C4-H4 bond. The influence of conformation as well as position of CF3 group in phenyl ring were investigated.

Results and Discussion

The calculated unscaled wavenumbers of CO stretching vibration in carbamate fragment ncar(CO), ester group nes(CO) as well as NH stretching vibrations ns(N1H) and nas(N3H) are presented in Table 1. Experimentally, in CHCl3 as a solvent the CO stretching band wih the lower wavenumber is assigned to CO of the carbamate fragment and the higher one to the ester CO. The nes(CO) covers the range 1700 cm-1 -1713 cm-1 whereas ncar(CO) is in interval 1645 cm-1 –1650 cm-1. In contrast to this experimental assignment, B3LYP/6-31G* calculations predict ncar(CO)>nes(CO) in the gaseous state. Possible reasons for these discrepancies between theoretically and experimentally determined order of CO vibrations are Three possible dimers 7a, 7b and 7c can be considered.
In IR spectra of analogous compounds (with unsubstituted phenyl ring) the methylation of N1 atom leads to increase of ncar(CO) from 1644,8 cm-1 to 1676,4 cm-1, which indicates that assumption of dimers in solution is realistic and hydrogen of N1 is involved in the hydrogen bonding. This encouraged us to use dimer 7a, but in order to reduced the computational cost the calculations were performed for the dimer 7d (Figure 1) without the aryl rings and methyl groups and with methoxy groups instead of ethoxy.

Figure 1 Structure of dimer 7d in gaseous state.

Moreover, measurements on the related compound 8 in different solvents revealed the sequence of stretching vibrations n(C2O)>n(C7O) consistent with that obtained by these calculations5.
The presence of butyl substituent at nitrogen atom prevents the formation of the dimers through hydrogen bonds. The hydrogen bonds between solute and CHCl3 group are also implausible since the wavenumber of C2=O stretching mode in CHCl3 solution (1704 cm-1) is only 6 cm-1 lower than in CCl4 (1710 cm-1) solution. This shift can satisfactorily be attributed to the lower dielectric constant of CCl4. If C3 were replaced by nitrogen atom, the n(C2O) could be expected at even higher value. This can be deduced from the comparison of IR spectra of urea (n(CO)=1734 cm-1) with acetamide (n(CO)=1728 cm-1) measured in Ar-matrix6 . The calculation on dimer 7d provides the order of CO stretching vibrations in agreement with experiment. The theoretical ncar(CO) is 1785 cm-1 for symmetric Ag mode and 1788 cm-1 for asymmetric Au mode and the nes(CO) is 1797 cm-1 and 1802 cm-1 for symmetric Ag and asymmetric Au mode, respectively. Besides treating the solvent as a contimuum, specific solvent-solute interactions were taken into consideration too. At the B3LYP/6-31G* level the associate of one representative solute with two molecules of CHCl3 (hydrogen bonds between hydrogen of CHCl3 and the oxygen of carbamate CO group (O…H)carbamate and between the hydrogen of the second CHCl3 molecule and the oxygen of ethoxy group (O…H)ethoxy) was calculated. We supposed that the (O…H)carbamate could be responsible for the reduction of ncar(CO) and (O…H)ethoxy could enhance the nes(CO) to such an extent, that the order of these vibrations would be consistent with the experimentally determined one. The calculations on the complex in which all three oxygen atoms are forming hydrogen bonds with three CHCl3 molecules (Figure 2), were performed at B3LYP/3-21G level on a model structure without aryl substituent. Although the hydrogen bond (O…H)carbamate was the strongest (CH stretching vibration of CHCl3 n(CH)=3048,6 cm-1) whereas (O…H)ethoxy was the weakest (n(CH)=3158,9 cm-1), it was not sufficient to alter the sequence ncar(CO)>nes(CO).

Figure 2 Structure of associate with three molecules of CHCl3 in gaseous state.

The calculations in CHCl3 provide lower values for both the ncar(CO) and nes(CO) than those obtained for the gaseous state. The s-trans conformers possess lower nes(CO) when compared to s-cis. The ns(N1H) and nas(N3H) are systematically higher in series of 2-CF3 positional isomers than in series of 3-CF3 positional isomers. The stretching vibrations of N-H are coupled to each other. The lower vibrations nas(N3H) in asymmetric mode are predominantly of N3-H character, while the higher vibrations ns(N1H) in symmetric mode are mainly of N1-H character. In Table 1 the significant vibrational coupling is marked and is typical for conformers with syn directed CF3 group in 2 position of phenyl. In the case of such a coupling the values of nas(N3H) and ns(N1H) become closer to each other. The relative energies with respect to the most stable conformer within both series are listed in Table 2 together with selected torsion angles. The effect of syn or anti orientation of CF3 group on relative energies is more pronounced in the set of conformers with CF3 in 2 position, where syn conformers are more stable. In set of conformers with CF3 in 3 position the s-cis or s-trans orientation decides the stability of conformers with s-cis orientation being more favourable.

Summary and Conclusion

We have presented the result from density functional B3LYP/6-31G* study of type s-cis-6a and s-trans-6b. The IR spectra are predicted for gas and for solution in CHCl3 using the Onsager reaction field model. The calculations on gaseous monomer as well as on monomer in CHCl3 solution give the opposite order of CO stretching vibrations than assigned experimentally. In order to resolve this discrepancy models for specific solvent-solute interactions as well as formation of dimers were applied. The associate formed between solute and solvents molecules through hydrogen bonds left the order unaffected, whereas in the dimer the hydrogen bonding altered the sequence consistent with experimental assignment. All possible conformers were assumed and relative stability of them was determined.

Acknowledgement

We wish to thank Mgr. Milan Uhlár for his effort with the web design of this page.

References

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