Synthesis and crystal
structure of [Cu(II)(bipy)2Cl]·NO3·3H2O
Liu He, Liu Chunhe, Zhong Bohua
(No.7 Department, Beijing Institute of
Pharmacology and Toxicology, Beijing 100850)
Abstract The title complex [Cu(II)(bipy)2Cl]·NO3·3H2O(bipy
= 2,2'-bipyridine) has been synthesized and characterized by X-ray diffraction analysis.
The Cu(II) center is five-coordinated and in a distorted trigonal bipyramidal geometry.
The complexes form a quasi-one-dimensional structure through neighboring p-p interactions.
Keywords crystal stucture, 2,2'-bipyridine, p-p interaction
Received May 8, 2004; Supported by the National Natural Science
Foundation of China (No. 20302015).
1 INTRODUCTION
The research on the coordination chemistry of transition metal complexes with polypyridyl
bridging ligands has progressed rapidly in recent years due to their potential as building
blocks for supramolecular assemblies directed by either metal coordination or other
intermolecular electronic interactions[1,2]. Polypyridyl ligands such as
phenanthroline and bipyridine can acted as a bridge or node to assemble multi-dimensional
supramolecular architecture through polydentate ligand or aromatic ring stacking and
hydrogen bonds. The complex of [Cu(II)(bipy)2Cl]- can be synthesis
easily by CuCl2·2H2O and bipy in water solution.
It can be as a building block to construct intricacy structures by substituting of the Cl-
anions. We got the complex [Cu(II)(bipy)2Cl]·NO3·3H2O
by NO3- using AgCl deposition method in the room temperature and the
coordinated Cl- anion can't be substituted as a result The molecular structures
of five coordinate copper(II) complexes show an extensive range from regular trigonal
bipyramidal to regular square based pyramidal structure of the majority of [Cu(chelate)2X]Y
complexes[3,4], the Cu(II) center of the title complex is in a distorted
trigonal bipyramidal geometry.
2.EXPERIMENTAL
2.1 Materials and Instruments
All the reagents for syntheses were commercially available and used without further
purification or purified by standard methods prior to use. Elemental analyses were
performed on a Perkin-Elmer 240C analyzer.
2.2 Preparation of the title complex
A homogenized mixture of CuCl2·2H2O(0.1mmol) and
bipy(0.2mmol) accurately weighed were added into water solution. After stirring for 30
min, a solution of AgNO3 (0.1mmol)in water was added and stirring for
another1h. The AgCl depositions were filtered. The blue cube crystals suitable for
structure determination were obtained by slow evaporation of the solvent. Yield: 45%.
Anal. Calcd for C20H22CuN5O6: C, 45.55; H,
4.20; N, 13.28. Found: C, 45.61; H, 4.26; N, 2.31.
2.3 Single crystal X-ray diffraction
The blue cube crystal was mounted on a BRUKER SMART 1000 CCD diffractometer equipped
with a graphite monochromator for data collection. The determination of unit cell
parameters and data collections were performed with MoKa radiation (l = 0.71073 Å).
A total of 9340 reflections with 3976 independent ones with Rint =
0.0223 and 3315 observed reflections with I > 2s (I) were collected in the range of 1.84 < q < 25.03o by
an w /q scan mode at 298(2) K. All data were corrected by using SADABS method.The
structure was solved by direct methods with SHELXL-97 program5. The final
refinement was performed by full-matrix least-squares methods with anisotropic thermal
parameters for non-hydrogen atoms on F2. Cu(II) atom in the complex was
located from E-maps. The hydrogen atoms were added theoretically, riding on the
concerned atoms and being refined with fixed thermal factors. The weighting scheme was w
= 1/[s 2(Fo2) + (0.0710P)2+
1.1220P], where P = (Fo2 + 2Fc2)/3.
The refinement converged to the final R = 0.0393 and wR = 0.1125. S =
1.026. Molecular graphics were drawn with the program package XP. Crystallographic data
and experimental details for structural analyses are summarized in Table 1. Positional
parameters and atomic coordinates are given in Table 2, whereas the selected bond
distances and angles are listed in Table 3, respectively. Full crystallographic details
have been deposited with the Cambridge Crystallographic Data Center and allocated the
deposition number CCDC-227251.
Table 1 Crystal and
experimental data
Formula: |
C20H22CuN5O6 |
Dm: |
1.588 g/cm3 |
Formula
weight: |
527.24 |
No. of
reflections used: |
9340 |
Crystal
system: |
Monoclinic |
2qmax: |
50.06¡ã
with Mo Ka |
Space
group: |
P21/n |
R: |
0.0393 |
Z: |
4 |
D/smax : |
0.001 |
a |
8.2303(10)Å |
Drmax: |
0.460 eŨC3 |
b |
21.189(3) |
Drmin: |
-0.308 eŨC3 |
c: |
13.1169(16) |
Measurement: |
BRUKER SMART
1000CCDC |
b : |
99.572(3)
¡ã |
Program
system: |
SAINT |
V: |
2255.6(5)
Å |
Structure
determination: |
direct
methods ( SHELXS-97) |
Refinement: |
full
matrix least-squares (SHELXL-97) |
|
Table 2 Atomic Coordinates (¡Á104)
and Equivalent Isotropic Displacement Parameters (103¡Á Å2)
atom |
x |
y |
z |
U(eq) |
Cu(1) |
7378(1) |
194(1) |
7454(1) |
48(1) |
Cl(1) |
9560(1) |
-77(1) |
6650(1) |
63(1) |
N(1) |
5348(3) |
756(1) |
6885(2) |
47(1) |
N(2) |
5906(3) |
-448(1) |
6676(2) |
49(1) |
N(3) |
7166(3) |
-105(1) |
8960(2) |
48(1) |
N(4) |
8679(3) |
861(1) |
8278(2) |
50(1) |
C(1) |
5152(4) |
1372(2) |
7034(3) |
59(1) |
C(2) |
3750(4) |
1693(2) |
6616(3) |
69(1) |
C(3) |
2517(4) |
1374(2) |
5997(3) |
69(1) |
C(4) |
2694(4) |
737(2) |
5831(2) |
57(1) |
C(5) |
4121(3) |
435(1) |
6287(2) |
46(1) |
C(6) |
4433(3) |
-244(1) |
6180(2) |
46(1) |
C(7) |
3331(4) |
-657(2) |
5614(2) |
59(1) |
C(8) |
3754(5) |
-1283(2) |
5556(3) |
68(1) |
C(9) |
5265(5) |
-1485(2) |
6048(3) |
67(1) |
C(10) |
6312(4) |
-1056(2) |
6602(3) |
60(1) |
C(11) |
9449(4) |
1324(2) |
7867(3) |
60(1) |
C(12) |
10379(4) |
1775(2) |
8464(3) |
66(1) |
C(13) |
10495(4) |
1745(2) |
9508(3) |
68(1) |
C(14) |
9693(4) |
1277(2) |
9946(3) |
61(1) |
C(15) |
8793(3) |
827(1) |
9313(2) |
48(1) |
C(16) |
7934(3) |
287(1) |
9696(2) |
48(1) |
C(17) |
7919(4) |
173(2) |
10731(3) |
62(1) |
C(18) |
7091(4) |
-345(2) |
11012(3) |
69(1) |
C(19) |
6286(4) |
-740(2) |
10266(3) |
64(1) |
C(20) |
6359(4) |
-604(2) |
9240(3) |
56(1) |
N(11) |
9290(6) |
7463(2) |
5936(3) |
93(1) |
O(11) |
9000(8) |
7728(2) |
6699(5) |
175(2) |
O(12) |
8539(7) |
7058(3) |
5496(5) |
186(2) |
O(13) |
10622(7) |
7633(3) |
5672(6) |
194(3) |
O(21) |
14090(6) |
8071(2) |
8470(4) |
153(2) |
O(22) |
11231(7) |
8603(2) |
7519(3) |
148(2) |
O(23) |
17329(6) |
7556(3) |
8486(4) |
163(2) |
U(eq) is defined as one third of the
trace of the orthogonalized Uij tensor.
Table 3 Select bond distance
( Å) and bond angles (¡ã)
Cu(1)-N(4) |
1.983(2) |
Cu(1)-N(3) |
2.110(2) |
Cu(1)-N(2) |
1.987(2) |
Cu(1)-Cl(1) |
2.3007(9) |
Cu(1)-N(1) |
2.087(2) |
|
|
N(4)-Cu(1)-N(2) |
175.05(10) |
N(1)-Cu(1)-N(3) |
108.65(9) |
N(4)-Cu(1)-N(1) |
96.61(9) |
N(4)-Cu(1)-Cl(1) |
92.03(8) |
N(2)-Cu(1)-N(1) |
79.86(10) |
N(2)-Cu(1)-Cl(1) |
92.88(7) |
N(4)-Cu(1)-N(3) |
79.89(10) |
N(1)-Cu(1)-Cl(1) |
128.17(7) |
N(2)-Cu(1)-N(3) |
97.88(10) |
N(3)-Cu(1)-Cl(1) |
123.18(7) |
3. RESULTS AND DISCUSSION
The ORTEP view of title complex with atom labeling is shown in Fig. 1(a). It consists
of a discrete [Cu(II)(bipy)Cl]+ cation and the uncoordinated NO3-
anion and H2O molecules. The Cu(II) center is coordinated by four nitrogen
atoms of the two bipyridine which thus binds metal center in a bidentate fashion, and a Cl-
anion. The four Cu-N bonds are appreciably different of the two ligands: with the longer
bonds being 2.087(2) and 2.110(2) Å,
and the other two shorter bonds being 1.983(2) and 1.987(2)Å, respectively. The
Cu-Cl distances are 2.3007(9) Å. The coordination geometry around Cu(II) can be
described as a distorted trigonal bipyramidal geometry with N(4)-Cu(1)-N(2) angle of
175.05(10)¡ã occupying the axial positions. The Cu(II) center deviates by 0.007 Å
from the plane defined by Cl(1), N(1) and N(3). The sum of the bond angles
[Cl(1)-Cu(1)-N(1) = 128.17(7)¡ã, N(1)-Cu(1)-N(3) = 108.65(9)¡ã and N(3)-Cu(1)-Cl(1) =
123.18(7)¡ã] is 360¡ã. In this complex, the Cu(II) center is coordinated by the N-atoms of
two pyridine rings forming a seven-membered chelate ring. As shown in Fig.1(b), there are
the O-H···O and O-H···Cl hydrogen bonds, in
which the coordinated Cl- and dissociate NO3- anions link
the uncoordinated water molecules, whereas the O···O distances are in
the range of 2.704-2.782 Å and O···Cl is 3.241 Å. The neighboring aromatic rings of 2,2'-bipyridine moiety between the adjacent complex are parallel to
each other and separated by approximately 3.40 and 3.55Å,
indicating the presence of significant face-to-face p-p stacking interactions. The p-p interactions link the complex into a quasi-one-dimensional
structure.
(a)
(b)
Fig. 1 (a) The ORTEP
structure of the title compound with atom labeling.
(b) Packing diagram of the title compound showing the intermolecular p-p stacking
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