Preparation and
structure of complex [Zn(tren)(Him)](ClO4)2
Ren Yanwei, Li Jun, Du
Guixiang Zhang Yongjin, Zhang Fengxing
(Shaanxi Key Laboratory of Physico-Inorganic Chemistry, Department of Chemistry, Northwest
University, Xi'an 710069, China)
Received Oct. 20, 2004; Supported by the
National Natural Science Foundation of China (No.20271041) and Shaanxi Natural Science
Foundation (No. 2002B04).
Abstract The complex Zn(tren)(Him)](ClO4)2
(tren=tris(2-aminoethyl)amine, Him=imidazole) has been synthesized and structurally
characterized. It crystallizes in the orthorhombic system, space group Pnma with
a=1.556(2) nm, b=0.8263(12) nm, c=1.501(2) nm, V=1.930(5) nm3 and Z=4.
Each zinc ion has a slightly distorted trigonal-bipyramidal configuration with four
nitrogen atoms from tren and one nitrogen atom from imidazole.
Keywords Zinc complex, crystal structure, tris(2-aminoethyl)amine, preparation.
The coordination chemistry of zinc is
receiving considerable attention in recent years, for zinc, which is, following iron, the
second-most abundant transition metal in biology, and which is represented in
metalloenzymes of all six classes of enzymes[1]. In order to mimic the zinc
coordination structure as well as the function of the zinc ion in biological system, many
new interesting zinc complexes have been designed and structurally characterized to
elucidate the detailed reaction mechanism in these zinc enzymes[2-8]. In this
paper, the synthesis of a new complex Zn(tren)(Him)](ClO4)2 and the
characterization of its crystal structure were described.
1. EXPERIMENTAL
1.1 Materials and physical measurements
Zinc(II) perchlorate was prepared by
ourselves[9]. The other reagents were of analytical grade from commercial
sources and were used without any further purification. The C, H and N elemental analyses were
performed using a Vario EL-III instrument. Zinc content was determined by EDTA titrations
using xylenol orange as the indicator. Infrared spectrum of the title complex was recorded
with Equinox55 spectrophotometer in the 4000--400 cm-1 region using a powdered
sample on a KBr plate. The diffraction data were collected on a Brucker SMART APEX CCD
area detector using graphite monochromated MoKa radiation (l=0.071073 nm).
1.2 Preparation of Zn(tren)(Him)](ClO4)2
To a ethanol solution (5mL) of Zn(ClO4)2·6H2O
(0.82g,2.2mmol) was added tren (0.34g, 2.2mmol). Shortly, much white precipitation formed
in the mixed solution, which would be solved by adding 5mL of water, and 0.15g imidazole
(2.2mmol) was added. The mixture was stirred for 1 h at room temperature, the solution was
filtered and stored in refrigerator(5ºC) until the colorless crystals formed. The product was filtered off, washed with
diethyl ether, and dried in air. Yield: 0.695g (66 %). Anal calcd (found) for C9H22Cl2N6O8Zn:
C, 22.76 (22.59); H, 4.56 (4.63); N, 17.44 (17.56), Zn, 13.65 (13.66). IR (KBr, cm-1):
3433[n (NH2)], 3134, 1498, 780[n (imidazole)].
1.3 X-ray crystallography
Diffraction data were collected by w-2q scan technique. The total reflections of 8540 were
collected, of which independent reflections of 1679 could be observed and used in the
structure analysis. The structure was solved by direct methods. The positions of all
remaining non-H atoms were obtained from successive Fourier syntheses. The positions of
all non-H atoms were refined anisotropically with full-matrix least-squares on F2.
In the final difference map, the residuals are 871 and -588 e/nm3,
respectively.
Table 1 Crystal data and structure
analysis parameters
Formula |
[Zn(tren)(Him)](ClO4)2 |
V (nm3) |
1.930(5) |
Crystal size (mm) |
0.43¡Á0.38¡Á0.25 |
Z |
4 |
Empirical formula |
C9H22Cl2N6O8Zn |
Dc (g/cm3) |
1.648 |
Temperature (K) |
298(2)K |
F (000) |
984 |
Wavelength (nm) |
0.071073 |
Scan mode |
w-2q |
Formula weight |
478.60 |
q range for date collection
(o) |
2.81£25.02 |
Crystal system |
Orthorhombic |
Absorption coefficient (mm-1) |
1.599 |
Space group |
Pnma |
Reflections collected |
8540 |
a (nm) |
1.556(2) |
Independent reflections |
1679 |
b (nm) |
0.8263(12) |
Goodness-of-fit (F2) |
0.981 |
c (nm) |
1.501(2) |
R [I>2 s (I)] |
0.0748 |
a (o) |
90.000 |
R (all data ) |
0.0943 |
b (o) |
90.000 |
Maximum diff. peak (e/nm3) |
871 |
g (o) |
90.000 |
Minimum diff. peak (e/nm3) |
-588 |
2. RESULTS AND DISCUSSION
Figure 1 shows the ORTEP projection of
the complex [Zn(tren)(Him)](ClO4)2. The crystallographic data and
analysis parameters are showed in Table 1. Selected bond lengths and bond angles are
listed in Table 2.
Table 2 Selected bond lengths (nm) and bond angles (o)
Bond length |
|
|
|
Zn(1)-N(1) |
0.2248(7) |
Zn(1)-N(4) |
0.2105(2) |
Zn(1)-N(2) |
0.2029(2) |
Zn(1)-N(5) |
0.2058(6) |
Zn(1)-N(3) |
0.2087(9) |
|
|
Bond angle |
|
|
|
N(2)-Zn(1)-N(5) |
98.7(6) |
N(5)-Zn(1)-N(4) |
98.7(6) |
N(2)-Zn(1)-N(3) |
115.3(11) |
N(3)-Zn(1)-N(4) |
120.1(9) |
N(5)-Zn(1)-N(3) |
101.0(4) |
N(2)-Zn(1)-N(1) |
83.2(6) |
N(2)-Zn(1)-N(4) |
116.6(6) |
N(5)-Zn(1)-N(1) |
175.7(5) |
N(3)-Zn(1)-N(1) |
81.6(4) |
N(4)-Zn(1)-N(1) |
77.0(6) |
Fig.1 ORTEP projection of
[Zn(tren)(Him)](ClO4)2
Fig.2 Structure of [Zn(tren)(Him)](ClO4)2,
showing the arrangement in the crystal lattice
The
structure of [Zn(tren)(Him)]2+ has an approximate C3 symmetry. The
zinc ion is five-coordinated with four nitrogen atoms from ligand tren and one nitrogen
atom from imidazole, forming a slightly distorted trigonal-bipyramidal configuration. The
tertiary amine nitrogen N(1) and the second amine nitrogen N(5) from imidazole are located
at the apices, and the three primary amine nitrogen atoms (N(2), N(3), N(4)) lie in the
equatorial positions. The very weak axial Zn-N(1) interaction with bond distance of
0.2248(7) nm is significantly longer than the equatorial Zn-N distances with an
average of 0.2074 nm. Analogous values have been observed in the previous complexes
[Zn(tren)(H2O)]2+ and [Zn(tren)(NCS)]+ with the mean
equatorial Zn-N distances of 0.2051(5) and 0.2058(5) nm, as well as 0.2193(4) and
0.2292(4) nm for the apical Zn-N distances, respectively[8,10]. The Zn(1)-N(5)
distance is 0.2058(6) nm. In the equatorial plane, the average N-Zn-N angle is 117.3(5)º, close to the
ideal value of 120º.The angles N(1)-Zn-N(2), N(1)-Zn-N(3) and N(1)-Zn-N(4)
are 83.2(6)º, 81.6(4)º and 77.0(6)º, respectively. The angle N(1)-Zn-N(5) of 175.7(5)º, indicating the
distorted trigonal-bipyramidal configuration, is within the values previously observed for
other polyamine zinc complexes[11]. Figure 2 shows the cell packing of the
complex Zn(tren)(Him)](ClO4)2. One of the oxygen atoms of
perchlorate forms hydrogen bond with the primary amine of the tren [N(4)-H¡O(1); 0.2960 nm, 119.64º; symmetry code:
x, y-1, z].
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